Spatio-temporal structure of cell fate decisions in murine neural crest

Ruslan Soldatov, Marketa Kaucka, Maria Eleni Kastriti, Julian Petersen, Tatiana Chontorotzea, Lukas Englmaier, Natalia Akkuratova, Yunshi Yang, Martin Haring, Viacheslav Dyachuk, Christoph Bock, Matthias Farlik, Michael L. Piacentino, Franck Boismoreau, Markus M. Hilscher, Chika Yokota, Xiaoyan Qian, Mats Nilsson, Marianne E. Bronner, Laura Croci, Wen-Yu Hsiao, David A. Guertin, Jean-Francois Brunet, Gian Giacomo Consalez, Patrik Ernfors, Kaj Fried, Peter V. Kharchenko, Igor Adameyko

Interactive views of PAGODA results:

The following links provide interactive views to the PAGODA results shown in the manuscript:

Code availability:

Analysis of transcriptional tree is available at https://github.com/hms-dbmi/crestree

All other code is available upon request.

Access to raw single-cell RNA-seq datasets and count matrices:

All single-cell RNA-seq datasets have been deposited in the GEO under accession code GSE129114

Supplementary data resource:

Supplementary data visualization: